Snakemake
3.10.0
Installation
Installation
Examples
Tutorial
Tutorial Setup
Basics: An example workflow
Advanced: Decorating the example workflow
Additional features
Executing workflows
The Snakemake Executable
Defining workflows
Writing Workflows
Rules
Configuration
Modularization
Remote files
Utils
Workflow Distribution and Deployment
API Reference
The Snakemake API
Additional utils
Project Info
Citing and Citations
More Resources
Frequently Asked Questions
Contributing
Credits
Change Log
License
Snakemake
Docs
»
Index
Index
A
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F
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L
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M
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Q
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R
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U
A
AlwaysQuotedFormatter (class in snakemake.utils)
available_cpu_count() (in module snakemake.utils)
F
format() (in module snakemake.utils)
format_element() (snakemake.utils.SequenceFormatter method)
L
linecount() (in module snakemake.utils)
listfiles() (in module snakemake.utils)
M
makedirs() (in module snakemake.utils)
min_version() (in module snakemake.utils)
Q
QuotedFormatter (class in snakemake.utils)
R
R() (in module snakemake.utils)
read_job_properties() (in module snakemake.utils)
report() (in module snakemake.utils)
S
SequenceFormatter (class in snakemake.utils)
set_protected_output() (in module snakemake.utils)
set_temporary_output() (in module snakemake.utils)
snakemake() (in module snakemake)
snakemake.utils (module)
U
update_config() (in module snakemake.utils)