Package | Description |
---|---|
htsjdk.samtools.cram.build | |
htsjdk.samtools.cram.encoding.reader | |
htsjdk.samtools.cram.structure |
Modifier and Type | Method and Description |
---|---|
java.util.Map<java.lang.Integer,AlignmentSpan> |
ContainerParser.getReferences(Container container,
ValidationStringency validationStringency) |
Modifier and Type | Method and Description |
---|---|
java.util.Map<java.lang.Integer,AlignmentSpan> |
RefSeqIdReader.getReferenceSpans() |
Modifier and Type | Field and Description |
---|---|
static AlignmentSpan |
AlignmentSpan.UNMAPPED_SPAN
A constant to represent an unmapped span.
|