Class and Description |
---|
Container |
CramHeader
A starting object when dealing with CRAM files.
|
Slice
CRAM slice is a logical union of blocks into for example alignment slices.
|
Class and Description |
---|
Container |
Class and Description |
---|
AlignmentSpan
A span of reads on a single reference.
|
CompressionHeader |
Container |
CramCompressionRecord |
CramHeader
A starting object when dealing with CRAM files.
|
SubstitutionMatrix |
Class and Description |
---|
CramCompressionRecord |
Class and Description |
---|
BlockCompressionMethod |
EncodingID
Encoding ID as defined in the CRAM specs.
|
EncodingParams |
Class and Description |
---|
EncodingID
Encoding ID as defined in the CRAM specs.
|
EncodingParams |
Class and Description |
---|
AlignmentSpan
A span of reads on a single reference.
|
CompressionHeader |
CramCompressionRecord |
Class and Description |
---|
CompressionHeader |
CramCompressionRecord |
SubstitutionMatrix |
Class and Description |
---|
CramCompressionRecord |
Class and Description |
---|
AlignmentSpan
A span of reads on a single reference.
|
Block
Class representing CRAM block concept and some methods to operate with block content.
|
BlockCompressionMethod |
BlockContentType |
CompressionHeader |
Container |
CramCompressionRecord |
CramHeader
A starting object when dealing with CRAM files.
|
EncodingID
Encoding ID as defined in the CRAM specs.
|
EncodingKey |
EncodingParams |
ReadTag
CRAM counterpart of
SAMTag . |
Slice
CRAM slice is a logical union of blocks into for example alignment slices.
|
SubstitutionMatrix |