Package | Description |
---|---|
htsjdk.tribble | |
htsjdk.tribble.bed | |
htsjdk.tribble.example | |
htsjdk.tribble.gelitext | |
htsjdk.tribble.readers | |
htsjdk.variant.vcf |
Modifier and Type | Method and Description |
---|---|
LineIterator |
AsciiFeatureCodec.makeSourceFromStream(java.io.InputStream bufferedInputStream) |
Modifier and Type | Method and Description |
---|---|
void |
AsciiFeatureCodec.close(LineIterator lineIterator) |
T |
AsciiFeatureCodec.decode(LineIterator lineIterator)
Convenience method.
|
boolean |
AsciiFeatureCodec.isDone(LineIterator lineIterator) |
abstract java.lang.Object |
AsciiFeatureCodec.readActualHeader(LineIterator reader)
Read and return the header, or null if there is no header.
|
FeatureCodecHeader |
AsciiFeatureCodec.readHeader(LineIterator lineIterator) |
Modifier and Type | Method and Description |
---|---|
java.lang.Object |
BEDCodec.readActualHeader(LineIterator reader) |
Modifier and Type | Method and Description |
---|---|
static <FEATURE_TYPE extends Feature> |
ExampleBinaryCodec.convertToBinaryTest(java.io.File source,
java.io.File dest,
FeatureCodec<FEATURE_TYPE,LineIterator> codec)
Convenience method that creates an ExampleBinaryCodec file from another feature file.
|
Modifier and Type | Method and Description |
---|---|
java.lang.Object |
GeliTextCodec.readActualHeader(LineIterator reader)
Deprecated.
|
Modifier and Type | Class and Description |
---|---|
class |
AsciiLineReaderIterator
A class that iterates over the lines and line positions in an
AsciiLineReader . |
class |
LineIteratorImpl
A simple iterator over the elements in LineReader.
|
Modifier and Type | Method and Description |
---|---|
java.lang.Object |
VCFCodec.readActualHeader(LineIterator lineIterator)
Reads all of the header from the provided iterator, but no reads no further.
|
java.lang.Object |
VCF3Codec.readActualHeader(LineIterator reader) |