Package | Description |
---|---|
htsjdk.samtools.cram.encoding.readfeatures | |
htsjdk.samtools.cram.structure |
Modifier and Type | Class and Description |
---|---|
class |
BaseQualityScore
A read feature representing a single quality score in a read.
|
class |
Bases |
class |
Deletion
A read feature representing a deletion of one or more bases similar to
CigarOperator.D . |
class |
HardClip
A read feature representing a hard clip similar to
CigarOperator.H . |
class |
InsertBase
A read feature representing a single insert base.
|
class |
Insertion
A read feature representing a multi-base insertion.
|
class |
Padding
A read feature representing padding, similar to
CigarOperator.P . |
class |
ReadBase
A read feature representing a single base with associated quality score.
|
class |
RefSkip
A read feature representing a reference skip similar to
CigarOperator.N . |
class |
Scores
A read feature representing a contiguous stretch of quality scores in a read.
|
class |
SoftClip
A read feature representing a soft clip similar to
CigarOperator.S . |
class |
Substitution
A substitution event captured in read coordinates.
|
Modifier and Type | Field and Description |
---|---|
java.util.List<ReadFeature> |
CramCompressionRecord.readFeatures |