Package | Description |
---|---|
htsjdk.tribble.index | |
htsjdk.tribble.index.interval | |
htsjdk.tribble.index.linear |
Modifier and Type | Class and Description |
---|---|
class |
DynamicIndexCreator
A DynamicIndexCreator creates the proper index based on an
IndexFactory.IndexBalanceApproach and
the characteristics of the file. |
Modifier and Type | Method and Description |
---|---|
protected static java.util.LinkedHashMap<java.lang.Double,TribbleIndexCreator> |
DynamicIndexCreator.scoreIndexes(double densityOfFeatures,
java.util.Map<IndexFactory.IndexType,TribbleIndexCreator> indexes,
int longestFeature,
IndexFactory.IndexBalanceApproach iba)
score the available indexes for the specified density and feature lengths
The scoring method is trying to determine how many features would be returned for a sample one base query; or:
(features/seek).
|
Modifier and Type | Method and Description |
---|---|
protected static java.util.LinkedHashMap<java.lang.Double,TribbleIndexCreator> |
DynamicIndexCreator.scoreIndexes(double densityOfFeatures,
java.util.Map<IndexFactory.IndexType,TribbleIndexCreator> indexes,
int longestFeature,
IndexFactory.IndexBalanceApproach iba)
score the available indexes for the specified density and feature lengths
The scoring method is trying to determine how many features would be returned for a sample one base query; or:
(features/seek).
|
Modifier and Type | Class and Description |
---|---|
class |
IntervalIndexCreator
Creates interval indexes from a stream of features
|
Modifier and Type | Class and Description |
---|---|
class |
LinearIndexCreator
For creating a LinearIndex from a stream of features.
|