Package | Description |
---|---|
htsjdk.samtools.cram |
Modifier and Type | Field and Description |
---|---|
static java.util.Comparator<CRAIEntry> |
CRAIEntry.byEnd |
static java.util.Comparator<CRAIEntry> |
CRAIEntry.byStart |
Modifier and Type | Method and Description |
---|---|
CRAIEntry |
CRAIEntry.clone() |
static CRAIEntry |
CRAIEntry.fromCraiLine(java.lang.String line) |
static CRAIEntry |
CRAIIndex.getLeftmost(java.util.List<CRAIEntry> list) |
Modifier and Type | Method and Description |
---|---|
static java.util.List<CRAIEntry> |
CRAIIndex.find(java.util.List<CRAIEntry> list,
int seqId,
int start,
int span) |
static java.util.List<CRAIEntry> |
CRAIEntry.fromContainer(Container container) |
static java.util.List<CRAIEntry> |
CRAIIndex.readIndex(java.io.InputStream is) |
Modifier and Type | Method and Description |
---|---|
int |
CRAIEntry.compareTo(CRAIEntry o) |
static boolean |
CRAIEntry.intersect(CRAIEntry e0,
CRAIEntry e1) |
Modifier and Type | Method and Description |
---|---|
static java.util.List<CRAIEntry> |
CRAIIndex.find(java.util.List<CRAIEntry> list,
int seqId,
int start,
int span) |
static int |
CRAIIndex.findLastAlignedEntry(java.util.List<CRAIEntry> list)
Find index of the last aligned entry in the list.
|
static CRAIEntry |
CRAIIndex.getLeftmost(java.util.List<CRAIEntry> list) |
static void |
CRAIIndex.writeIndex(java.io.OutputStream os,
java.util.List<CRAIEntry> index) |